phylogenetic heatmap
In the era of genome editing, one of urgently required technology in plant biology is finding out proper target which doesn't have functional redundancy.
CAFRI is a simple web-based tool that help user to find proper target in genome editing with CRISPR system. It visualizes functional redundancy of quried gene as phylogenetic heatmap and pearson correlation coefficient score.
Possible redundant genes are highlighted with yellow, orange, and orange-red background.
Input examples
No family | One | Two | |
---|---|---|---|
Araport11 | AT1G01130 | AT1G01225 | AT1G01210 |
Color scale log2 expression value
![](/static/Arabidopsis/New_colorbar.png)
PCC highlight information
![](/static/Arabidopsis/PCC.png)
Panel information Click to see more information
Document
CAFRI-Arabidopsis: An Intuitive Web-Based Functional Redundancy Inspector in Arabidopsis. doi: 10.1007/s12374-024-09421-z
CAFRI-Arabidopsis will be closed due to university blackout!
16th~18th of August (GMT+9)