CAFRI-Arabidopsis CRISPR Applicable Functional Redundancy Inspector

CAFRI-Arabidopsis Predict functional redundancy with phylogenetic heatmap

phylogenetic heatmap

In the era of genome editing, one of urgently required technology in plant biology is finding out proper target which doesn't have functional redundancy. CAFRI is a simple web-based tool that help user to find proper target in genome editing with CRISPR system. It visualizes functional redundancy of quried gene as phylogenetic heatmap and pearson correlation coefficient score. Possible redundant genes are highlighted with yellow, orange, and orange-red background.

Input examples
No family One Two
Araport11 AT1G01130 AT1G01225 AT1G01210

Select Database




Color scale log2 expression value


PCC highlight information


Panel information Click to see more information


Document

CAFRI-Arabidopsis: An Intuitive Web-Based Functional Redundancy Inspector in Arabidopsis. doi: 10.1007/s12374-024-09421-z


CAFRI-Arabidopsis will be unstable due to server maintenance!

31th of May ~ 8th of June (GMT+9)